<html><head><title>IAO.owl</title></head><style type='text/css'> ul { list-style-type: none; margin-left: 10px; padding-left:10px;} </style><h2>Ontology: http://purl.obofoundry.org/obo/iao.owl</h2><h3><i>Ontology Annotations</i></h3><b>protegeowl:defaultLanguage</b>: en<br><b>rdfs:comment</b>: a dependent continuant or its bearer that is created as the result of one or more intentional processes. Examples: uniprot, the english language, the contents of this document or a printout of it, the temperature measurements from a weather balloon.<br><b>owl:imports</b>: http://purl.org/obo/owl/OBO_REL<br><b>owl:imports</b>: http://www.ifomis.org/bfo/1.1<br><h3><i>Class Tree</i></h3><ul><a href='#item1'>Thing</a><ul style='border-left: thin solid #999999'>
<li><a href='#item2'>DataProperty</a></li><li><a href='#item3'>String</a></li><li><a href='#item4'>Subset</a></li><li><a href='#item5'>SynonymType</a></li><li><a href='#item6'>Definition</a></li><li><a href='#item7'>DbXref</a></li><a href='#item8'>entity</a><ul style='border-left: thin solid #999999'>
<a href='#item9'>occurrent</a><ul style='border-left: thin solid #999999'>
<a href='#item10'>temporal_region</a><ul style='border-left: thin solid #999999'>
<a href='#item11'>connected_temporal_region</a><ul style='border-left: thin solid #999999'>
<li><a href='#item12'>temporal_interval</a></li><li><a href='#item13'>temporal_instant</a></li></ul>
<li><a href='#item14'>scattered_temporal_region</a></li></ul>
<a href='#item15'>spatiotemporal_region</a><ul style='border-left: thin solid #999999'>
<li><a href='#item16'>scattered_spatiotemporal_region</a></li><a href='#item17'>connected_spatiotemporal_region</a><ul style='border-left: thin solid #999999'>
<li><a href='#item18'>spatiotemporal_instant</a></li><li><a href='#item19'>spatiotemporal_interval</a></li></ul>
</ul>
<a href='#item20'>processual_entity</a><ul style='border-left: thin solid #999999'>
<li><a href='#item21'>process_boundary</a></li><li><a href='#item22'>process</a></li><li><a href='#item23'>fiat_process_part</a></li><li><a href='#item24'>process_aggregate</a></li><li><a href='#item25'>processual_context</a></li></ul>
</ul>
<a href='#item26'>continuant</a><ul style='border-left: thin solid #999999'>
<a href='#item27'>dependent_continuant</a><ul style='border-left: thin solid #999999'>
<a href='#item28'>specifically_dependent_continuant</a><ul style='border-left: thin solid #999999'>
<a href='#item29'>realizable_entity</a><ul style='border-left: thin solid #999999'>
<li><a href='#item30'>function</a></li><li><a href='#item31'>role</a></li><li><a href='#item32'>disposition</a></li></ul>
<a href='#item33'>quality</a><ul style='border-left: thin solid #999999'>
<li><a href='#item34'>information carrier</a></li><li><a href='#item35'>unit of measure</a></li></ul>
</ul>
<a href='#item36'>generically_dependent_continuant</a><ul style='border-left: thin solid #999999'>
<a href='#item37'>information content entity</a><ul style='border-left: thin solid #999999'>
<li><a href='#item38'>source code module</a></li><a href='#item39'>setting datum</a><ul style='border-left: thin solid #999999'>
<li><a href='#item40'>fluorescent reporter intensity</a></li><li><a href='#item41'>parameter threshold</a></li><li><a href='#item42'>fluorescence compensation matrix</a></li></ul>
<li><a href='#item43'>measurement unit label</a></li><a href='#item44'>data set</a><ul style='border-left: thin solid #999999'>
<li><a href='#item45'>gene list</a></li><li><a href='#item46'>cluster</a></li></ul>
<a href='#item47'>information entity about a realizable</a><ul style='border-left: thin solid #999999'>
<li><a href='#item48'>data format specification</a></li><li><a href='#item49'>objective specification</a></li><a href='#item50'>plan specification</a><ul style='border-left: thin solid #999999'>
<a href='#item51'>algorithm</a><ul style='border-left: thin solid #999999'>
<li><a href='#item52'>software interpreter</a></li></ul>
<li><a href='#item53'>investigation design</a></li><li><a href='#item54'>programming language</a></li><li><a href='#item55'>study design</a></li><li><a href='#item56'>protocol</a></li></ul>
<a href='#item57'>conditional specification</a><ul style='border-left: thin solid #999999'>
<li><a href='#item58'>rule</a></li><li><a href='#item59'>adverse event trigger</a></li><li><a href='#item60'>time trigger</a></li></ul>
</ul>
<a href='#item61'>narrative object</a><ul style='border-left: thin solid #999999'>
<a href='#item62'>conclusion</a><ul style='border-left: thin solid #999999'>
<li><a href='#item63'>assessment</a></li></ul>
<a href='#item64'>report display element</a><ul style='border-left: thin solid #999999'>
<a href='#item65'>report figure</a><ul style='border-left: thin solid #999999'>
<a href='#item66'>report graph</a><ul style='border-left: thin solid #999999'>
<li><a href='#item67'>density plot</a></li><li><a href='#item68'>contour plot</a></li><li><a href='#item69'>dot plot</a></li></ul>
</ul>
<li><a href='#item70'>report table</a></li></ul>
<a href='#item71'>report of results</a><ul style='border-left: thin solid #999999'>
<li><a href='#item72'>investigation results report</a></li><li><a href='#item73'>journal article content</a></li></ul>
<li><a href='#item74'>patent content</a></li></ul>
<a href='#item75'>measurement datum</a><ul style='border-left: thin solid #999999'>
<li><a href='#item76'>number of lost events computer</a></li><li><a href='#item77'>number of lost events electronic</a></li><li><a href='#item78'>number of particles in subset</a></li><a href='#item79'>quantitative confidence value</a><ul style='border-left: thin solid #999999'>
<li><a href='#item80'>p-value</a></li><li><a href='#item81'>standard error</a></li></ul>
<li><a href='#item82'>measured expression level</a></li><li><a href='#item83'>ratio of collected to emitted light</a></li></ul>
<li><a href='#item84'>list-mode data file</a></li><li><a href='#item85'>image</a></li><li><a href='#item86'>curation status specification</a></li></ul>
<a href='#item87'>_identifier</a><ul style='border-left: thin solid #999999'>
<li><a href='#item88'>device model</a></li><li><a href='#item89'>genome sequence version number</a></li><li><a href='#item90'>serial number</a></li><li><a href='#item91'>catalog number</a></li><li><a href='#item92'>version number</a></li><li><a href='#item93'>lot number</a></li></ul>
<a href='#item94'>digital quality</a><ul style='border-left: thin solid #999999'>
<a href='#item95'>digital entity</a><ul style='border-left: thin solid #999999'>
<li><a href='#item84'>list-mode data file</a></li><li><a href='#item96'>binary executable</a></li><a href='#item97'>digital document</a><ul style='border-left: thin solid #999999'>
<li><a href='#item98'>eSource document</a></li><li><a href='#item99'>electronic case report form</a></li><li><a href='#item100'>eMedical record</a></li><li><a href='#item101'>text based digital entity</a></li><li><a href='#item102'>electronic case report tabulation</a></li></ul>
<li><a href='#item103'>binary digital entity</a></li><li><a href='#item104'>analytical cytology data file</a></li></ul>
</ul>
</ul>
</ul>
<a href='#item105'>spatial_region</a><ul style='border-left: thin solid #999999'>
<li><a href='#item106'>two_dimensional_region</a></li><li><a href='#item107'>one_dimensional_region</a></li><li><a href='#item108'>zero_dimensional_region</a></li><li><a href='#item109'>three_dimensional_region</a></li></ul>
<a href='#item110'>independent_continuant</a><ul style='border-left: thin solid #999999'>
<a href='#item111'>material entity</a><ul style='border-left: thin solid #999999'>
<li><a href='#item112'>object_aggregate</a></li><li><a href='#item113'>object</a></li><li><a href='#item114'>fiat_object_part</a></li><li><a href='#item115'>material information bearer</a></li></ul>
<li><a href='#item116'>site</a></li><li><a href='#item117'>artifact</a></li><li><a href='#item118'>object_boundary</a></li></ul>
</ul>
</ul>
<li><a href='#item119'>ObsoleteClass</a></li><li><a href='#item120'>Synonym</a></li></ul>
</ul><hr><h3><i>Property Tree</i></h3><ul><li><i>AnnotationProperty</i></li><ul style='border-left: thin solid #999999'><li><a href='#item120'>Subject&middot;and&middot;Keywords</a> (dc:)</li>
<li><a href='#item121'>Description</a> (dc:)</li>
<li><a href='#item122'>Title</a> (dc:)</li>
<li><a href='#item123'>Resource&middot;Type</a> (dc:)</li>
<li><a href='#item124'>Relation</a> (dc:)</li>
<li><a href='#item125'>Coverage</a> (dc:)</li>
<li><a href='#item126'>Date</a> (dc:)</li>
<li><a href='#item127'>example&middot;of&middot;usage</a> (obi:)</li>
<li><a href='#item128'>definition&middot;source</a> (obi:)</li>
<li><a href='#item129'>definition</a> (obi:)</li>
<li><a href='#item130'>editor&middot;note</a> (obi:)</li>
<li><a href='#item131'>has&middot;curation&middot;status</a> (obi:)</li>
<li><a href='#item132'>definition&middot;editor</a> (obi:)</li>
<li><a href='#item133'>preferred&middot;term</a> (obi:)</li>
<li><a href='#item134'>alternative&middot;term</a> (obi:)</li>
<li><a href='#item135'>branch</a> (obi:)</li>
<li><a href='#item136'>hasDate</a> (obo:)</li>
<li><a href='#item137'>hasSubset</a> (obo:)</li>
<li><a href='#item138'>hasNarrowSynonym</a> (obo:)</li>
<li><a href='#item139'>hasBroadSynonym</a> (obo:)</li>
<li><a href='#item140'>hasVersion</a> (obo:)</li>
<li><a href='#item141'>hasAlternativeId</a> (obo:)</li>
<li><a href='#item142'>hasExactSynonym</a> (obo:)</li>
<li><a href='#item143'>consider</a> (obo:)</li>
<li><a href='#item144'>hasURI</a> (obo:)</li>
<li><a href='#item145'>hasDefinition</a> (obo:)</li>
<li><a href='#item146'>hasOBONamespace</a> (obo:)</li>
<li><a href='#item147'>inSubset</a> (obo:)</li>
<li><a href='#item148'>hasDefaultNamespace</a> (obo:)</li>
<li><a href='#item149'>hasSynonymType</a> (obo:)</li>
<li><a href='#item150'>savedBy</a> (obo:)</li>
<li><a href='#item151'>replacedBy</a> (obo:)</li>
<li><a href='#item152'>hasDbXref</a> (obo:)</li>
<li><a href='#item153'>hasRelatedSynonym</a> (obo:)</li>
<li><a href='#item154'>versionInfo</a> (owl:)</li>
<li><a href='#item155'>defaultLanguage</a> (protegeowl:)</li>
<li><a href='#item156'>comment</a> (rdfs:)</li>
<li><a href='#item157'>seeAlso</a> (rdfs:)</li>
<li><a href='#item158'>isDefinedBy</a> (rdfs:)</li>
<li><a href='#item159'>label</a> (rdfs:)</li>
</ul><li><i>DatatypeProperty</i></li><ul style='border-left: thin solid #999999'><li><a href='#item160'>Format</a></li>
<li><a href='#item161'>Publisher</a></li>
<li><a href='#item162'>Source</a></li>
<li><a href='#item163'>Contributor</a></li>
<li><a href='#item164'>Creator</a></li>
<li><a href='#item165'>Rights&middot;Management</a></li>
<li><a href='#item166'>Resource&middot;Identifier</a></li>
<li><a href='#item167'>Language</a></li>
</ul><li><i>ObjectProperty</i></li><ul style='border-left: thin solid #999999'><li><a href='#item168'>propertyChain</a></li>
<li><a href='#item169'>relationship</a></li><ul style='border-left: thin solid #999999'><li><a href='#item170'>preceded_by</a></li>
<li><a href='#item171'>has_participant</a></li><ul style='border-left: thin solid #999999'><li><a href='#item172'>has_agent</a></li>
</ul>
<li><a href='#item173'>participates_in</a></li><ul style='border-left: thin solid #999999'><li><a href='#item174'>agent_in</a></li>
</ul>
<li><a href='#item175'>contains</a></li>
<li><a href='#item176'>located_in</a></li>
<li><a href='#item177'>part_of</a></li><ul style='border-left: thin solid #999999'><li><a href='#item178'>improper_part_of</a></li>
<li><a href='#item179'>integral_part_of</a></li>
</ul>
<li><a href='#item180'>derives_from</a></li>
<li><a href='#item181'>derived_into</a></li>
<li><a href='#item182'>precedes</a></li>
<li><a href='#item183'>adjacent_to</a></li>
<li><a href='#item184'>transformation_of</a></li>
</ul>
<li><a href='#item185'>is&middot;about</a></li><ul style='border-left: thin solid #999999'><li><a href='#item186'>represents</a></li>
<li><a href='#item187'>materially&middot;denotes</a></li>
<li><a href='#item188'>describes</a></li>
<li><a href='#item189'>specifically&middot;denotes</a></li>
<li><a href='#item190'>is&middot;quality&middot;measurement&middot;of</a></li>
<li><a href='#item191'>generically&middot;denotes</a></li>
<li><a href='#item192'>Blank-7fdb</a></li>
</ul>
<li><a href='#item193'>ObsoleteProperty</a></li><ul style='border-left: thin solid #999999'><li><a href='#item194'>improper_part_of</a></li>
<li><a href='#item195'>transformed_into</a></li>
</ul>
</ul></ul><hr><h3><i>Class Descriptions</i></h3><a name='item1'><html><div style="width:800"><b>Class: http://www.w3.org/2002/07/owl#Thing<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item2'><html><div style="width:800"><b>Class: http://www.w3.org/2002/07/owl#DataProperty<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item3'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000007<br></b><b><i>String</i></b><i><br></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item4'><html><div style="width:800"><b>Class: http://www.geneontology.org/formats/oboInOwl#Subset<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item5'><html><div style="width:800"><b>Class: http://www.geneontology.org/formats/oboInOwl#SynonymType<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item6'><html><div style="width:800"><b>Class: http://www.geneontology.org/formats/oboInOwl#Definition<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item7'><html><div style="width:800"><b>Class: http://www.geneontology.org/formats/oboInOwl#DbXref<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item8'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1#Entity<br></b><b><i>entity</i></b><i><br></i><font color="#000080">(<i>or</i>&nbsp;continuant&nbsp;occurrent)</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item9'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#Occurrent<br></b><b><i>occurrent</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An entity [bfo:Entity] that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.; Examples: the life of an organism, a surgical operation as processual context for a nosocomical infection, the spatiotemporal context occupied by a process of cellular meiosis, the most interesting part of Van Gogh's life, the spatiotemporal region occupied by the development of a cancer tumor; Synonyms: perdurant</div></i><font color="#000080">(<i>and</i>&nbsp;entity&nbsp;(<i>or</i>&nbsp;processual_entity&nbsp;spatiotemporal_region&nbsp;temporal_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item10'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#TemporalRegion<br></b><b><i>temporal_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An occurrent [span:Occurrent] that is part of time.; Examples: the time it takes to run a marathon, the duration of a surgical procedure, the moment of death; Comment: An instance of temporal region [span:TemporalRegion] is a part of time. All parts of time are temporal region [span:TemporalRegion] entities and only temporal region [span:TemporalRegion] entities are parts of time. Time is the entire extent of the temporal universe, a designated individual, which is thus a temporal region itself.; Comment: Time and temporal region [span:TemporalRegion] entities are entities in their own rights which exist independently of any entities which can be located at them. This view of time can be called "absolutist" or "the container view" in analogy to what is traditionally the case with space (see spatial region [snap:SpatialRegion].; Comment: All instances of occurrent [span:Occurrent] are temporal entities, that is, they enter in the relation of (temporal) location with temporal region [span:TemporalRegion] entities. As a particular case, the exact spatiotemporal location of a temporal region [span:TemporalRegion] is this region itself. Continuant [snap:Continuant] entities are not temporal entities in the technical sense just explained; they are related to time in a different way, not through temporal location but through a relation of existence at a time or during a period of time (see continuant [snap:Continuant].</div></i><font color="#000080">(<i>and</i>&nbsp;occurrent&nbsp;(<i>or</i>&nbsp;connected_temporal_region&nbsp;scattered_temporal_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item11'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ConnectedTemporalRegion<br></b><b><i>connected_temporal_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A temporal region [span:TemporalRegion] every point of which is mediately or immediately connected with every other point of which.; Examples: the 1970s years, the time from the beginning to the end of a heart attack, the time taken up by cellular meiosis</div></i><font color="#000080">(<i>and</i>&nbsp;temporal_region&nbsp;(<i>not</i>&nbsp;scattered_temporal_region)<br>&nbsp;(<i>or</i>&nbsp;temporal_instant&nbsp;temporal_interval))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item12'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#TemporalInterval<br></b><b><i>temporal_interval</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A connected temporal region [span:ConnectedTemporalRegion] lasting for more than a single moment of time.; Examples: any continuous temporal duration during which a process occurs</div></i><font color="#000080">(<i>and</i>&nbsp;connected_temporal_region&nbsp;(<i>not</i>&nbsp;temporal_instant))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item13'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#TemporalInstant<br></b><b><i>temporal_instant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A connected temporal region [span:ConnectedTemporalRegion] comprising a single moment of time.; Examples: right now, the moment at which a finger is detached in an industrial accident, the moment at which a child is born, the moment of death</div></i><font color="#000080">(<i>and</i>&nbsp;connected_temporal_region&nbsp;(<i>not</i>&nbsp;temporal_interval))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item14'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ScatteredTemporalRegion<br></b><b><i>scattered_temporal_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A temporal region [span:TemporalRegion] every point of which is not mediately or immediately connected with every other point of which.; Examples: the time occupied by the individual games of the World Cup, the time occupied by the individual liaisons in a romantic affair</div></i><font color="#000080">(<i>and</i>&nbsp;temporal_region&nbsp;(<i>not</i>&nbsp;connected_temporal_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item15'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#SpatiotemporalRegion<br></b><b><i>spatiotemporal_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An occurrent [span:Occurrent] at or in which processual entity [span:ProcessualEntity] entities can be located.; Comment: All instances of occurrent [span:Occurrent] are spatiotemporal entities, that is, they enter in the relation of (spatiotemporal) location with spatiotemporal region [span:SpatiotemporalRegion] entities. As a particular case, the exact spatiotemporal location of a spatiotemporal region [span:SpatiotemporalRegion] is this region itself.; Comment: Spacetime and spatiotemporal region [span:SpatiotemporalRegion] entities are entities in their own rights which exist independently of any entities which can be located at them. This view of spacetime can be called "absolutist" or "the container view". In BFO, the class processual context [span:ProcessualContext] allows for a so-called relational view of spacetime, that is to say, a view according to which spatiotemporality is a matter of relative location between entities and not a matter of being tied to spacetime. In BFO, the bridge between these two views is secured through the fact that instances of processual context [span:ProcessualContext] are too spatiotemporal entities.; Examples: the spatiotemporal region occupied by a human life, the spatiotemporal region occupied by the development of a cancer tumor, the spatiotemporal context occupied by a process of cellular meiosis; Comment: An instance of the spatiotemporal region [span:SpatiotemporalRegion] is a part of spacetime. All parts of spacetime are spatiotemporal region [span:SpatiotemporalRegion] entities and only spatiotemporal region [span:SpatiotemporalRegion] entities are parts of spacetime. In particular, neither spatial region [snap:SpatialRegion] entities nor temporal region [span:TemporalRegion] entities are in BFO parts of spacetime. Spacetime is the entire extent of the spatiotemporal universe, a designated individual, which is thus itself a spatiotemporal region [span:SpatiotemporalRegion]. Spacetime is among occurrents the analogous of space among continuant [snap:Continuant] entities.</div></i><font color="#000080">(<i>and</i>&nbsp;(<i>not</i>&nbsp;temporal_region)&nbsp;occurrent<br>&nbsp;(<i>or</i>&nbsp;connected_spatiotemporal_region&nbsp;scattered_spatiotemporal_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item16'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ScatteredSpatiotemporalRegion<br></b><b><i>scattered_spatiotemporal_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A space time region [span:SpaceTimeRegion] that has spatial and temporal dimensions and every spatial and temporal point of which is not connected with every other spatial and temporal point of which.; Examples: the space and time occupied by the individual games of the World Cup, the space and time occupied by the individual liaisons in a romantic affair</div></i><font color="#000080">spatiotemporal_region</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item17'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ConnectedSpatiotemporalRegion<br></b><b><i>connected_spatiotemporal_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A space time region [span:SpaceTimeRegion] that has temporal and spatial dimensions such that all points within the spatiotemporal region are mediately or immediately connected to all other points within the same space time region [span:SpaceTimeRegion].; Examples: the spatial and temporal location of an individual organism's life, the spatial and temporal location of the development of a fetus</div></i><font color="#000080">(<i>and</i>&nbsp;spatiotemporal_region&nbsp;(<i>not</i>&nbsp;scattered_spatiotemporal_region)<br>&nbsp;(<i>or</i>&nbsp;spatiotemporal_instant&nbsp;spatiotemporal_interval))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item18'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#SpatiotemporalInstant<br></b><b><i>spatiotemporal_instant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A connected space time region [span:ConnectedSpaceTimeRegion] at a specific moment.; Examples: the space time region occupied by a single instantaneous temporal slice (part) of a process</div></i><font color="#000080">connected_spatiotemporal_region</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item19'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#SpatiotemporalInterval<br></b><b><i>spatiotemporal_interval</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A connected space time region [span:ConnectedSpaceTimeRegion] that endures for more than a single moment of time.; Examples: the space time region occupied by a process or by a fiat processual part</div></i><font color="#000080">(<i>and</i>&nbsp;connected_spatiotemporal_region&nbsp;(<i>not</i>&nbsp;spatiotemporal_instant))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item20'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ProcessualEntity<br></b><b><i>processual_entity</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity.; Examples: the life of an organism, the process of meiosis, the course of a disease, the flight of a bird</div></i><font color="#000080">(<i>and</i>&nbsp;occurrent<br>&nbsp;(<i>or</i>&nbsp;fiat_process_part&nbsp;process&nbsp;process_aggregate&nbsp;process_boundary<br>&nbsp;&nbsp;processual_context)<br>&nbsp;(<i>disjoint-with</i>&nbsp;temporal_region&nbsp;spatiotemporal_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item21'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ProcessBoundary<br></b><b><i>process_boundary</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A processual entity [span:ProcessualEntity] that is the fiat or bona fide instantaneous temporal process boundary.; Examples: birth, death, the forming of a synapse, the onset of REM sleep, the detaching of a finger in an industrial accident, the final separation of two cells at the end of cell-division, the incision at the beginning of a surgery</div></i><font color="#000080">(<i>and</i>&nbsp;processual_entity&nbsp;(<i>disjoint-with</i>&nbsp;process_aggregate&nbsp;processual_context))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item22'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#Process<br></b><b><i>process</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A processual entity [span:ProcessualEntity] that is a maximally connected spatiotemporal whole and has bona fide beginnings and endings corresponding to real discontinuities.; Examples: the life of an organism, the process of sleeping, the process of cell-division</div></i><font color="#000080">(<i>and</i>&nbsp;processual_entity<br>&nbsp;(<i>disjoint-with</i>&nbsp;process_aggregate&nbsp;process_boundary&nbsp;processual_context))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item23'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#FiatProcessPart<br></b><b><i>fiat_process_part</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A processual entity [span:ProcessualEntity] that is part of a process but that does not have bona fide beginnings and endings corresponding to real discontinuities.; Examples: chewing during a meal, the middle part of a rainstorm, the worst part of a heart-attack, the most interesting part of Van Gogh's life</div></i><font color="#000080">(<i>and</i>&nbsp;processual_entity<br>&nbsp;(<i>disjoint-with</i>&nbsp;process&nbsp;process_aggregate&nbsp;process_boundary&nbsp;processual_context))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item24'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ProcessAggregate<br></b><b><i>process_aggregate</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A processual entity [span:ProcessualEntity] that is a mereological sum of process [span:Process] entities and possesses non-connected boundaries.; Examples: the beating of the hearts of each of seven individuals in the room, the playing of each of the members of an orchestra, a process of digestion and a process of thinking taken together</div></i><font color="#000080">(<i>and</i>&nbsp;processual_entity<br>&nbsp;(<i>disjoint-with</i>&nbsp;processual_context&nbsp;fiat_process_part&nbsp;process&nbsp;process_boundary))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item25'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/span#ProcessualContext<br></b><b><i>processual_context</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Comment: An instance of a processual context [span:ProcessualContext] is a mixture of processual entity [span:ProcessualEntity] which stand as surrounding environments for other processual entity [span:ProcessualEntity] entities. The class processual context [span:ProcessualContext] is the analogous among occurrent [span:Occurrent] entities to the class site [snap:Site] among continuant [snap:Continuant] entities.; Examples: The processual context for a given manipulation occurring as part of an experiment is made of processual entities which occur in parallel, are not necessarily all parts of the experiment themselves and may involve continuant [snap:Continuant] entities which are in the spatial vicinity of the participants in the experiment.; Definition: An occurrent [span:Occurrent] consisting of a characteristic spatial shape inhering in some arrangement of other occurrent [span:Occurrent] entities. processual context [span:ProcessualContext] entities are characteristically entities at or in which other occurrent [span:Occurrent] entities can be located or occur.</div></i><font color="#000080">(<i>and</i>&nbsp;processual_entity<br>&nbsp;(<i>disjoint-with</i>&nbsp;fiat_process_part&nbsp;process&nbsp;process_boundary))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item26'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#Continuant<br></b><b><i>continuant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An entity [bfo:Entity] that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.; Examples: a heart, a person, the color of a tomato, the mass of a cloud, a symphony orchestra, the disposition of blood to coagulate, the lawn and atmosphere in front of our building; Synonyms: endurant</div></i><font color="#000080">(<i>and</i>&nbsp;entity&nbsp;(<i>not</i>&nbsp;occurrent)<br>&nbsp;(<i>or</i>&nbsp;dependent_continuant&nbsp;independent_continuant&nbsp;spatial_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item27'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#DependentContinuant<br></b><b><i>dependent_continuant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A continuant [snap:Continuant] that is either dependent on one or other independent continuant [snap:IndependentContinuant] bearers or inheres in or is borne by other entities.</div></i><font color="#000080">(<i>and</i>&nbsp;continuant&nbsp;(<i>not</i>&nbsp;spatial_region)<br>&nbsp;(<i>or</i>&nbsp;generically_dependent_continuant&nbsp;specifically_dependent_continuant))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item28'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant<br></b><b><i>specifically_dependent_continuant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A continuant [snap:Continuant] that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.; Examples: the mass of a cloud, the smell of mozzarella, the liquidity of blood, the color of a tomato, the disposition of fish to decay, the role of being a doctor, the function of the heart in the body: to pump blood, to receive de-oxygenated and oxygenated blood, etc.; Synonyms: property, trope, mode</div></i><font color="#000080">(<i>and</i>&nbsp;dependent_continuant&nbsp;(<i>or</i>&nbsp;quality&nbsp;realizable_entity))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item29'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#RealizableEntity<br></b><b><i>realizable_entity</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A specifically dependent continuant [snap:SpecificallyDependentContinuant] that inheres in continuant [snap:Continuant] entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.; Examples: the role of being a doctor, the function of the reproductive organs, the disposition of blood to coagulate, the disposition of metal to conduct electricity; Comment: If a realizable entity [snap:RealizableEntity] inheres in a continuant [snap:Continuant], this does not imply that it is actually realized.</div></i><font color="#000080">(<i>and</i>&nbsp;specifically_dependent_continuant&nbsp;(<i>not</i>&nbsp;quality))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item30'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#Function<br></b><b><i>function</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A realizable entity [snap:RealizableEntity] the manifestation of which is an essentially end-directed activity of a continuant [snap:Continuant] entity in virtue of that continuant [snap:Continuant] entity being a specific kind of entity in the kind or kinds of contexts that it is made for.; Examples: the function of a birth canal to enable transport, the function of the heart in the body: to pump blood, to receive de-oxygenated and oxygenated blood, etc., the function of reproduction in the transmission of genetic material, the digestive function of the stomach to nutriate the body, the function of a hammer to drive in nails, the function of a computer program to compute mathematical equations, the function of an automobile to provide transportation, the function of a judge in a court of law</div></i><font color="#000080">(<i>and</i>&nbsp;realizable_entity&nbsp;(<i>disjoint-with</i>&nbsp;disposition&nbsp;role))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item31'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#Role<br></b><b><i>role</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A realizable entity [snap:RealizableEntity] the manifestation of which brings about some result or end that is not essential to a continuant [snap:Continuant] in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant [snap:Continuant] in some kinds of natural, social or institutional contexts.; Examples: the role of a person as a surgeon, the role of a chemical compound in an experiment, the role of a patient relative as defined by a hospital administrative form, the role of a woman as a legal mother in the context of system of laws, the role of a biological grandfather as legal guardian in the context of a system of laws, the role of ingested matter in digestion, the role of a student in a university</div></i><font color="#000080">(<i>and</i>&nbsp;realizable_entity&nbsp;(<i>not</i>&nbsp;function))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item32'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#Disposition<br></b><b><i>disposition</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A realizable entity [snap:RealizableEntity] that essentially causes a specific process or transformation in the object [snap:Object] in which it inheres, under specific circumstances and in conjunction with the laws of nature. A general formula for dispositions is: X (object [snap:Object] has the disposition D to (transform, initiate a process) R under conditions C.; Examples: the disposition of vegetables to decay when not refrigerated, the disposition of a vase to brake if dropped, the disposition of blood to coagulate, the disposition of a patient with a weakened immune system to contract disease, the disposition of metal to conduct electricity.</div></i><font color="#000080">(<i>and</i>&nbsp;realizable_entity&nbsp;(<i>disjoint-with</i>&nbsp;role&nbsp;function))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item33'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#Quality<br></b><b><i>quality</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A specifically dependent continuant [snap:SpecificallyDependentContinuant] that is exhibited if it inheres in an entity or entities at all (a categorical property).; Examples: the color of a tomato, the ambient temperature of air, the circumference of a waist, the shape of a nose, the mass of a piece of gold, the weight of a chimpanzee</div></i><font color="#000080">(<i>and</i>&nbsp;specifically_dependent_continuant&nbsp;(<i>not</i>&nbsp;realizable_entity))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item34'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000015<br></b><b><i>information carrier</i></b><i><br></i><font color="#000080">quality</font><br><i>example of usage</i>: The pattern in ink on a page of a paperback novel.<br><i>definition source</i>: Smith, Ceusters, Ruttenberg, 2000 years of philosophy<br><i>definition</i>: an information carrier is that quality of an information bearer that imparts the information content<br><i>has curation status</i>: has curation status<br><i>definition editor</i>: Alan Ruttenberg<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item35'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000024<br></b><b><i>unit of measure</i></b><i><br></i><font color="#000080">quality</font><br><i>example of usage</i>: The length of a ruler.<br><i>definition source</i>: Smith, Ceusters, Ruttenberg, 2000 years of philosophy<br><i>definition</i>: a unit of measure is the quality of some material entity compared to which another quality is some multiple of.<br><i>has curation status</i>: has curation status<br><i>definition editor</i>: Alan Ruttenberg<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item36'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#GenericallyDependentContinuant<br></b><b><i>generically_dependent_continuant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A continuant [snap:Continuant] that is dependent on one or other independent continuant [snap:IndependentContinuant] bearers. For every instance of A requires some instance of (an independent continuant [snap:IndependentContinuant] type) B but which instance of B serves can change from time to time.; Examples: a certain PDF file that exists in different and in several hard drives</div></i><font color="#000080">(<i>and</i>&nbsp;dependent_continuant&nbsp;(<i>not</i>&nbsp;specifically_dependent_continuant))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item37'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000030<br></b><b><i>information content entity</i></b><i><br></i><font color="#000080">(<i>and</i>&nbsp;(is&middot;about&nbsp;<i>some</i>&nbsp;entity)&nbsp;generically_dependent_continuant)</font><br><i>example of usage</i>: Examples of information content entites include journal articles, data, graphical layouts, and graphs.<br><i>definition source</i>: OBI_0000142<br><i>definition</i>: an information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: information content entity<br><i>editor note</i>: information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).

Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item38'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000096<br></b><b><i>source code module</i></b><i><br></i><font color="#000080">information&middot;content&middot;entity</font><br><i>example of usage</i>: The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script.<br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000039<br><i>definition</i>: A source code module is an information content entity that specifies, using a programming language, some algorithm.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: source code module<br><i>definition editor</i>: person:Chris Stoeckert<br><i>definition editor</i>: person:Alan Ruttenberg<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item39'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000140<br></b><b><i>setting datum</i></b><i><br></i><font color="#000080">information&middot;content&middot;entity</font><br><i>has curation status</i>: has curation status<br><i>editor note</i>: Alan grouped these in placeholder for the moment. Name by analogy to measurement datum.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item40'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000066<br></b><b><i>fluorescent reporter intensity</i></b><i><br></i><font color="#000080">setting&middot;datum</font><br><i>definition source</i>: OBI_0000010<br><i>definition source</i>: group:OBI<br><i>definition</i>: The fluorescent reproter intensity is a datum that represents the output of a scanner measuring the intensity value for each fluorescent reporter.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: fluorescent reporter intensity<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: From the DT branch: This term and definition were originally submitted by the community to our branch, but we thought they best fit DENRIE. However we see several issues with this. First of all the name 'probe' might not be used in OBI. Instead we have a 'reporter' role. Also, albeit the term 'probe intensity' is often used in communities such as the microarray one, the name 'probe' is ambiguous (some use it to refer to what's on the array, some use it to refer to what's hybed to the array). Furthermore, this concept could possibly be encompassed by combining different OBI terms, such as the roles of analyte, detector and reporter (you need something hybed to a probe on the array to get an intensity) and maybe a more general term for 'measuring intensities'. We need to find the right balance between what is consistent with OBI and combinations of its terms and what is user-friendly. Finally, note that 'intensity' is already in the OBI .owl file and is also in PATO. Why didn't OBI import it from PATO? This might be a problem.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item41'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000108<br></b><b><i>parameter threshold</i></b><i><br></i><font color="#000080">setting&middot;datum</font><br><i>example of usage</i>: 0.01, 0.03<br><i>definition source</i>: OBI_0000172<br><i>definition source</i>: Submitted by the Flow Cytometry community in DigitalEntity-FlowCytometry-2007-03-30.txt<br><i>definition</i>: A parameter threshold is a datum measuring the minimal signal that must be detected to generate an electrical event, as comparewd to the maximal detected signal in a flow cytometer insturment. The datum has a qualitative role<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: parameter threshold<br><i>definition editor</i>: person:Kevin Clancy<br><i>editor note</i>: quantity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item42'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000084<br></b><b><i>fluorescence compensation matrix</i></b><i><br></i><font color="#000080">setting&middot;datum</font><br><i>example of usage</i>: ((1.053096, -0.22476), (-0.24877, 1.053096))<br><i>definition source</i>: group:Flow Cytometry community<br><i>definition source</i>: OBI_0000213<br><i>definition</i>: A fluorescence compensation matrix is a square matrix which is used as the left multiplier of the vector of fluorescence values while performing digital fluorescence compensation. Also, fluorescence compensation matrix is the inverse of the fluorescence spillover matrix.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: fluorescence compensation matrix<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: generically_dependent_continuants<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item43'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000003<br></b><b><i>measurement unit label</i></b><i><br></i><font color="#000080">information&middot;content&middot;entity</font><br><i>example of usage</i>: Examples of measurement unit labels are liters, inches, weight per volume.<br><i>definition source</i>: OBI_0000176<br><i>definition source</i>: group:OBI<br><i>definition</i>: A measurement unit label is an information content entity associated with a physical magnitude that has been conventionally assigned a number.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: measurement unit label<br><i>definition editor</i>: person:Chris Stoeckert<br><i>definition editor</i>: person:Cristian Cocos<br><i>editor note</i>: remove? See unit of measure.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item44'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000100<br></b><b><i>data set</i></b><i><br></i><font color="#000080">information&middot;content&middot;entity</font><br><i>definition source</i>: OBI_0000042<br><i>definition source</i>: group:OBI<br><i>definition</i>: A data set is an information content entity that is an aggregate of other information_content_entities that have something in common and are considered to form a unit.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: data set<br><i>definition editor</i>: person:Chris Stoeckert<br><i>definition editor</i>: person:Allyson<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item45'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000077<br></b><b><i>gene list</i></b><i><br></i><font color="#000080">data&middot;set</font><br><i>example of usage</i>: Gene lists may arise from analysis to determine differentially expressed genes, may be collected from the literature for involvement in a particular process or pathway (e.g., inflammation), or may be the input for gene set enrichment analysis.<br><i>definition source</i>: OBI_0000118<br><i>definition source</i>: group:OBI<br><i>definition</i>: A gene list is a report of the names or identifiers of genes that are the outcome of an analysis or have been put together for the purpose of an analysis.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: gene list<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: kind of report. (alan) need to be careful to distinguish from output of a data transformation or calculation. A gene list is a report when it is published as such? Relates to question of whether report is a whole, or whether it can be a part of some other narrative object.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item46'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000026<br></b><b><i>cluster</i></b><i><br></i><font color="#000080">data&middot;set</font><br><i>example of usage</i>: Cluster of the lymphocytes population.<br><i>definition source</i>: OBI_0000251<br><i>definition source</i>: group:OBI<br><i>definition</i>: A data cluster is a data set which is a subset of data that are a similar to each other in some way.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: cluster<br><i>definition editor</i>: person:Chris Stoeckert<br><i>definition editor</i>: person:Allyson<br><i>editor note</i>: generically_dependent_continuants<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item47'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000033<br></b><b><i>information entity about a realizable</i></b><i><br></i><font color="#000080">(<i>and</i>&nbsp;information&middot;content&middot;entity<br>&nbsp;(is&middot;about&nbsp;<i>some</i>&nbsp;realizable_entity))</font><br><i>definition source</i>: OBI_0000337<br><i>definition source</i>: OBI branch derived<br><i>alternative term</i>: instruction<br><i>definition</i>: is the specification of a plan that can be concretized and realized by an actor.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: guide<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><i>editor note</i>: Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item48'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000098<br></b><b><i>data format specification</i></b><i><br></i><font color="#000080">information&middot;entity&middot;about&middot;a&middot;realizable</font><br><i>definition source</i>: OBI branch derived<br><i>definition source</i>: OBI_0000187<br><i>definition</i>: A data format specification is the information content borne by the document published defining the specification.

blah:
 for organizing information artifacts. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: data format specification<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item49'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000005<br></b><b><i>objective specification</i></b><i><br></i><font color="#000080">information&middot;entity&middot;about&middot;a&middot;realizable</font><br><i>example of usage</i>: purpose of a study; support of hypothesis, discovery of new information<br><i>branch</i>: IAO<br><i>definition source</i>: OBI_0000217<br><i>definition source</i>: source pending<br><i>definition</i>: objective is an non realizable information entity which can serve as that  proper part of a plan  towards which the realization of the plan is directed. (note: achievement<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: objective specification<br><i>definition editor</i>: Jennifer Fostel /Barry Smith<br><i>editor note</i>: Answers the question, why did you do this experiment?<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item50'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000104<br></b><b><i>plan specification</i></b><i><br></i><font color="#000080">information&middot;entity&middot;about&middot;a&middot;realizable</font><br><i>example of usage</i>: PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.<br><i>definition source</i>: OBI branch derived<br><i>definition source</i>: OBI_0000344<br><i>definition</i>: a plan specification is a specification of a process that an actor can engage in to achieve the objective specified as part of the plan<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: plan specification<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><i>editor note</i>: Part of range for an object property is_potentially_realizable_as in obi before split (LF 040907)<br><i>editor note</i>: Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item51'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000064<br></b><b><i>algorithm</i></b><i><br></i><font color="#000080">plan&middot;specification</font><br><i>example of usage</i>: PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies.<br><i>definition source</i>: OBI_0000270<br><i>definition source</i>: adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)<br><i>definition</i>: an algorithm is a plan which describes inputs, output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: algorithm<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><i>definition editor</i>: Philippe Rocca-Serra<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item52'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000065<br></b><b><i>software interpreter</i></b><i><br></i><font color="#000080">algorithm</font><br><i>example of usage</i>: R program, Perl interpreter, Java virtual machine<br><i>definition source</i>: OBI_0000199<br><i>definition source</i>: group:OBI<br><i>definition</i>: A  software interpreter is a generically dependent realizable entity that takes, as input, some digital entity, and takes action driven by the information content of that digital entity<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: software interpreter<br><i>definition editor</i>: person:Alan Ruttenberg<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: Do we care? Jennifer: Yes, there was a particular version of R that had a bug and it was fixed later. That would imply that we mean specific version of an interpreter. So an instance of this would be a particular version of the interpreter<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item53'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000032<br></b><b><i>investigation design</i></b><i><br></i><font color="#000080">plan&middot;specification</font><br><i>definition source</i>: OBI_0000335<br><i>definition source</i>: OBI branch derived<br><i>definition</i>: Investigation_design is a plan for an investigation. definition_source: OBI.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: investigation design<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item54'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000025<br></b><b><i>programming language</i></b><i><br></i><font color="#000080">plan&middot;specification</font><br><i>example of usage</i>: R, Perl, Java<br><i>definition source</i>: OBI_0000058<br><i>definition source</i>: group:OBI<br><i>definition</i>: A language in which source code is written, intended to executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: programming language<br><i>definition editor</i>: person:Alan Ruttenberg<br><i>definition editor</i>: person:Chris Stoeckert<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item55'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000016<br></b><b><i>study design</i></b><i><br></i><font color="#000080">plan&middot;specification</font><br><i>example of usage</i>: TODO:<br><i>definition source</i>: OBI_0500000<br><i>definition source</i>: KPC<br><i>alternative term</i>: experimental design<br><i>definition</i>: A formal description of the constraints on the possible configurations of an experiment which is subject to given conditions. A design is sometimes called an experimental design. source:http://mathworld.wolfram.com/Design.html\nEditor Note: Philippe Rocca-Serra added this; Description of how an experiment is performed. Experiments are designed by applying applications to biomaterials in an ordered fashion. Applications define protocols which are used to moving biomaterial through a series of manipulations to generate one or more desired products. methods describe the particulars of the manipulation, reagents and associated materials used in the manipulation of the biomaterial.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: study design<br><i>definition editor</i>: KPC<br><i>editor note</i>: From Kevin Clancy not yet discussed<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item56'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000070<br></b><b><i>protocol</i></b><i><br></i><font color="#000080">plan&middot;specification</font><br><i>example of usage</i>: PMID: 18388943.Nat Protoc. 2008;3(4):612-8.Protocol for the induction of arthritis in C57BL/6 mice.<br><i>definition source</i>: OBI_0000272<br><i>definition source</i>: OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)<br><i>definition</i>: protocol is a plan which outlines a set of instructions to achieve a specific objective relevant to the biomedical domain and which can be realized as a protocol application.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: protocol<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item57'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000001<br></b><b><i>conditional specification</i></b><i><br></i><font color="#000080">information&middot;entity&middot;about&middot;a&middot;realizable</font><br><i>definition source</i>: OBI branch derived<br><i>definition source</i>: OBI_0000349<br><i>definition</i>: is a plan to carry out a process or an event if the trigger condition is fulfilled<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: instruction trigger<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item58'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000055<br></b><b><i>rule</i></b><i><br></i><font color="#000080">conditional&middot;specification</font><br><i>example of usage</i>: example to be added<br><i>definition source</i>: OBI_0500021<br><i>definition source</i>: PRS<br><i>definition</i>: a rule is an executable which guides, defines, restricts actions<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: rule<br><i>definition editor</i>: PRS<br><i>editor note</i>: MSI<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item59'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000060<br></b><b><i>adverse event trigger</i></b><i><br></i><font color="#000080">conditional&middot;specification</font><br><i>definition source</i>: OBI branch derived<br><i>definition source</i>: OBI_0000310<br><i>definition</i>: revisit?<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: adverse event trigger<br><i>definition editor</i>: PERSON:Alan Ruttenberg<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item60'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000034<br></b><b><i>time trigger</i></b><i><br></i><font color="#000080">conditional&middot;specification</font><br><i>definition source</i>: OBI branch derived<br><i>definition source</i>: OBI_0000331<br><i>definition</i>: revisit?<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: time trigger<br><i>definition editor</i>: PlanAndPlannedProcess Branch<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item61'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000006<br></b><b><i>narrative object</i></b><i><br></i><font color="#000080">information&middot;content&middot;entity</font><br><i>example of usage</i>: Examples of narrative objects are reports, journal  articles, and patents submission.<br><i>definition source</i>: OBI_0000013<br><i>definition source</i>: group:OBI<br><i>definition</i>: A narrative object is an information content entity that is a set of propositions.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: narrative object<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: agree - DENRIE. Issue(alan) do we only mean text? What about a story told by mime. Does music count? (no) what about an oral report. Regarding definition, saying it is a set of propositions means we loose the idea that wording matters. Maybe adjust saying a narrative object has some relationshop to a set of propositions<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item62'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000035<br></b><b><i>conclusion</i></b><i><br></i><font color="#000080">narrative&middot;object</font><br><i>definition source</i>: OBI_0000005<br><i>definition</i>: A conclusion is a narrative object which can be published in a paper summerizing and interpreting a protocol application.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: conclusion<br><i>definition editor</i>: Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item63'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000051<br></b><b><i>assessment</i></b><i><br></i><font color="#000080">conclusion</font><br><i>definition source</i>: OBI_0000150<br><i>definition</i>: Assessment is a conclusion derived from the processes used to learn about a patient's condition.  In part from NCI<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: assessment<br><i>definition editor</i>: Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item64'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000091<br></b><b><i>report display element</i></b><i><br></i><font color="#000080">narrative&middot;object</font><br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000001<br><i>definition</i>: A report display element is a narrative object that is part of a report. Report display elements are set off from the textual parts of a report and are typically given a label(e.g. Figure 2) which is used to refer to the element from the text. Typically the 2d layout is part of the identity of such elements.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: report display element<br><i>definition editor</i>: person:Allyson Lister<br><i>definition editor</i>: person:Alan Ruttenberg<br><i>editor note</i>: There will be some issue here about whether these are defined classes. As intended these are meant to denote the parts of the report that are not textual but are typically boxed and set within the text, labelled with some identifier, and referred to in the text<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item65'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000059<br></b><b><i>report figure</i></b><i><br></i><font color="#000080">report&middot;display&middot;element</font><br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000027<br><i>definition</i>: A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: report figure<br><i>definition editor</i>: person:Allyson Lister<br><i>definition editor</i>: person:Alan Ruttenberg<br><i>editor note</i>: I prepended the 'report ' to make it clear that we mean parts of reports here. We may want a more generic version of 'figure', in which case this would become a defined class - figure and part_of some report<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item66'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000038<br></b><b><i>report graph</i></b><i><br></i><font color="#000080">report&middot;figure</font><br><i>definition source</i>: OBI_0000240<br><i>definition source</i>: group:OBI<br><i>definition</i>: A report graph is a report figure that presents one or more tuples of information my mapping those tuples in to a two dimensional space in a non arbitrary way.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: report graph<br><i>definition editor</i>: person:Allyson Lister<br><i>definition editor</i>: person:Alan Ruttenberg<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item67'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000079<br></b><b><i>density plot</i></b><i><br></i><font color="#000080">report&middot;graph</font><br><i>example of usage</i>: Density plot of SSC-H and FSC-H.<br><i>definition source</i>: group:Flow Cytometry community<br><i>definition source</i>: OBI_0000179<br><i>definition</i>: A density plot is a report graph which is a graphical representation of data where the tint of a particular pixel corresponds to some kind of function corresponding the the amount of data points relativelly with their distance from the the pixel.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: density plot<br><i>definition editor</i>: person:Chris Stoeckert<br><i>definition editor</i>: person:Allyson<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item68'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000057<br></b><b><i>contour plot</i></b><i><br></i><font color="#000080">report&middot;graph</font><br><i>example of usage</i>: Contour plot of SSC-H, FSC-H, and FL1-H.<br><i>definition source</i>: group:Flow Cytometry community<br><i>definition source</i>: OBI_0000246<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: contour plot<br><i>definition editor</i>: person:Chris Stoeckert<br><i>definition editor</i>: person:Allyson<br><i>editor note</i>: generically_dependent_continuants<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item69'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000037<br></b><b><i>dot plot</i></b><i><br></i><font color="#000080">report&middot;graph</font><br><i>example of usage</i>: Dot plot of SSC-H and FSC-H.<br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000123<br><i>definition</i>: A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: dot plot<br><i>definition editor</i>: person:Chris Stoeckert<br><i>definition editor</i>: person:Allyson<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item70'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000097<br></b><b><i>report table</i></b><i><br></i><font color="#000080">report&middot;display&middot;element</font><br><i>definition source</i>: OBI_0000265<br><i>definition source</i>: group:OBI<br><i>definition</i>: A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: report table<br><i>definition editor</i>: person:Alan Ruttenberg<br><i>definition editor</i>: person:Allyson Lister<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item71'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000088<br></b><b><i>report of results</i></b><i><br></i><font color="#000080">narrative&middot;object</font><br><i>example of usage</i>: Examples of reports are gene lists and investigation reports. These are not published (journal) articles but may be included in a journal article.<br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000099<br><i>definition</i>: A report is a narrative object that is a formal statement of the results of an investigation, or of any matter on which definite information is required, made by some person or body instructed or required to do so.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: report of results<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: disagreement about where reports go. alan: only some gene lists are reports. Is a report all the content of some document? The example of usage suggests that a report may be part of  some article. Term needs clarification<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item72'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000017<br></b><b><i>investigation results report</i></b><i><br></i><font color="#000080">report&middot;of&middot;results</font><br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000218<br><i>definition</i>: An investigation report is a report on the results of an investigation.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: investigation results report<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: There's probably a role that it plays. Would this be considered an outcome? (alan)<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item73'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000013<br></b><b><i>journal article content</i></b><i><br></i><font color="#000080">report&middot;of&middot;results</font><br><i>example of usage</i>: Examples of encodings of journal article content are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g.  Authors, Title of article, Journal name, date or year of publication, volume and page number.<br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000159<br><i>definition</i>: Journal article content is a narrative object that is the information content encoded in a article published in a serious, scholarly publication, most often peer-reviewed.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: journal article content<br><i>definition editor</i>: person:Alan Ruttenberg<br><i>definition editor</i>: person:Chris Stoeckert<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item74'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000021<br></b><b><i>patent content</i></b><i><br></i><font color="#000080">narrative&middot;object</font><br><i>definition source</i>: OBI_0000028<br><i>definition source</i>: group:OBI<br><i>definition</i>: A patent content is a report for the purpose of obtaining a license from a government conferring for a set period the sole right to make, use, or sell some process or invention<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: patent content<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: need to distinguish the patent submission (which I think the term refers to) and the patent itself, which is what confers the rights. (Alan) Renamed from patent to patent submission. [Isn't the submission like a recipe, i.e. a realizable information entity, in that it tells you how to do something? no] Cristian: what is the difference b/w some document that has been patented, and the same document that has not been patented? The (informational) content is the same. It is just that the former has been encapsulated within some social mechanism, hence it has acquired some role. Hence 'patent' is a role.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item75'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000109<br></b><b><i>measurement datum</i></b><i><br></i><font color="#000080">information&middot;content&middot;entity</font><br><i>example of usage</i>: Examples of data are the recoding of the weight of a mouse, the recording of an observation of the behavior of the mouse, the recording of the expression level of a gene as measured through the process of microarray experiment. Instance level information is information describing a specific instance of an entity<br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000305<br><i>definition</i>: A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by an instrument.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: measurement datum<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: was measurement. (alan) Is this the old quantitative value? If so need to change cardinal part of stuff. I think the value and units should be on special relations and that the value should not be a BFO entity.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item76'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000073<br></b><b><i>number of lost events computer</i></b><i><br></i><font color="#000080">measurement&middot;datum</font><br><i>example of usage</i>: 0, 125, 787 events lost due to computer busy.<br><i>definition source</i>: OBI_0000269<br><i>definition source</i>: Submitted by the Flow Cytometry community in DigitalEntity-FlowCytometry-2007-03-30.txt<br><i>definition</i>: A number of lost events is a datum recording the the number of measurement events lost due to overloading of the analysis chip in a flow cytometer insturment. The datum has a qualitative role<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: number of lost events computer<br><i>definition editor</i>: person:Kevin Clancy<br><i>editor note</i>: quantity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item77'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000045<br></b><b><i>number of lost events electronic</i></b><i><br></i><font color="#000080">measurement&middot;datum</font><br><i>example of usage</i>: 74, 0, 14 events lost due to data acquisition electronic coincidence.<br><i>definition source</i>: OBI_0000125<br><i>definition source</i>: Submitted by the Flow Cytometry community in DigitalEntity-FlowCytometry-2007-03-30.txt<br><i>definition</i>: A number of lost events electronic is a datum measuring the the number of analysis events lost due to errors in data acquisition electronic coincidence in a flow cytometer insturment. The datum has a qualitative role.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: number of lost events electronic<br><i>definition editor</i>: person:Kevin Clancy<br><i>editor note</i>: quantity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item78'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000103<br></b><b><i>number of particles in subset</i></b><i><br></i><font color="#000080">measurement&middot;datum</font><br><i>example of usage</i>: 500, 200, 0<br><i>definition source</i>: Submitted by the Flow Cytometry community in DigitalEntity-FlowCytometry-2007-03-30.txt<br><i>definition source</i>: OBI_0000119<br><i>definition</i>: A number of particles in subset is a datum measuring the the number of subjects in a defined subset in a flow cytometer instrument. The datum has a qualitative role<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: number of particles in subset<br><i>definition editor</i>: person:Kevin Clancy<br><i>editor note</i>: quantity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item79'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000056<br></b><b><i>quantitative confidence value</i></b><i><br></i><font color="#000080">measurement&middot;datum</font><br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000071<br><i>definition</i>: A quantitative confidence value is a information content entity which is used to indicate the degree of uncertainty about a measurement.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: quantitative confidence value<br><i>definition editor</i>: person:Chris Stoeckert<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item80'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000020<br></b><b><i>p-value</i></b><i><br></i><font color="#000080">quantitative&middot;confidence&middot;value</font><br><i>definition source</i>: OBI_0000175<br><i>definition source</i>: group:OBI<br><i>definition</i>: A p-value is a quantitative confidence value which represents the probability of obtaining a result at least as extreme as that actually obtained, assuming that the actual value was the result of chance alone.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: p-value<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: ask data transformation. Are they thinking about this too? What is this, in reality. Quality of the measurement? Quality of a population of measurements? Issue: How to avoid having numbers being an easy way to miss connections with reality<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item81'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000046<br></b><b><i>standard error</i></b><i><br></i><font color="#000080">quantitative&middot;confidence&middot;value</font><br><i>definition source</i>: OBI_0000235<br><i>definition source</i>: group:OBI<br><i>definition</i>: Standard error is a quantitative confidence value which is the standard deviations of the sample in a frequency distribution, obtained by dividing the standard deviation by the total number of cases in the frequency distribution.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: standard error<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: see P-Value<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item82'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000068<br></b><b><i>measured expression level</i></b><i><br></i><font color="#000080">measurement&middot;datum</font><br><i>example of usage</i>: Examples are quantified data from an expression microarray experiment, PCR measurements, etc.<br><i>definition source</i>: OBI Data Transformation branch<br><i>definition source</i>: OBI_0000101<br><i>definition</i>: A measured expression level is a datum that is the outcome of the quantification of an assay for the activity of a gene, or the number of RNA trancsripts.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: measured expression level<br><i>definition editor</i>: person:Chris Stoeckert<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item83'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000014<br></b><b><i>ratio of collected to emitted light</i></b><i><br></i><font color="#000080">measurement&middot;datum</font><br><i>example of usage</i>: 10%<br><i>definition source</i>: Submitted by the Flow Cytometry community in DigitalEntity-FlowCytometry-2007-03-30.txt<br><i>definition source</i>: OBI_0000054<br><i>definition</i>: A ratio of collected to emitted light is a datum measuring the amount of light collected s compared to the total amount of emitted light in the detector component of a flow cytometer instrument. The datum has a qualitative role<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: ratio of collected to emitted light<br><i>definition editor</i>: person:Kevin Clancy<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: quantity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item84'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000011<br></b><b><i>list-mode data file</i></b><i><br></i><font color="#000080">(<i>and</i>&nbsp;digital&middot;entity&nbsp;information&middot;content&middot;entity)</font><br><i>example of usage</i>: An example of a list-mode data file is a file following list-mode Flow Cytometry Standard (FCS) format. Since FCS files can be in histogram mode or  list-mode we have to specify which data format specifically. List-mode format in the overwhelming (even universal) option used.<br><i>definition source</i>: OBI_0000021<br><i>definition source</i>: group:Flow Cytometry community<br><i>definition</i>: A list-mode data file is a digital entity where events are stored sequentially, parameter by parameter.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: list-mode data file<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: One example of usage is in the context of flow cytometry, however is not restricted to this community and is more widely used, e.g. by imaging people.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item85'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000101<br></b><b><i>image</i></b><i><br></i><font color="#000080">information&middot;content&middot;entity</font><br><i>definition source</i>: OBI_0000030<br><i>definition source</i>: group:OBI<br><i>definition</i>: An image is an information content entity which provides a visual representation of for the result of a measurement.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: image<br><i>definition editor</i>: person:Allyson<br><i>definition editor</i>: person:Chris Stoeckert<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item86'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000078<br></b><b><i>curation status specification</i></b><i><br></i><font color="#000080">(<i>and</i><br>&nbsp;(<i>or</i>&nbsp;(<i>has</i>&nbsp;metadata&middot;incomplete)<br>&nbsp;&nbsp;(<i>has</i>&nbsp;ready&middot;for&middot;release)&nbsp;(<i>has</i>&nbsp;uncurated)<br>&nbsp;&nbsp;(<i>has</i>&nbsp;metadata&middot;complete)&nbsp;(<i>has</i>&nbsp;placeholder)<br>&nbsp;&nbsp;(<i>has</i>&nbsp;pending&middot;final&middot;vetting)<br>&nbsp;&nbsp;(<i>has</i>&nbsp;example&middot;to&middot;be&middot;eventually&middot;removed))<br>&nbsp;information&middot;content&middot;entity)</font><br><i>definition source</i>: OBI_0000266<br><i>definition source</i>: GROUP:OBI:<http://obi.sourceforge.net><br><i>definition</i>: The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: curation status specification<br><i>definition editor</i>: PERSON:Bill Bug<br><i>editor note</i>: Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item87'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000128<br></b><b><i>_identifier</i></b><i><br></i><font color="#000080">generically_dependent_continuant</font><br><i>has curation status</i>: has curation status<br><i>editor note</i>: _identifier is a container under information content entity for collecting types of terms to indicate a specific instance or clas of what was used or participated in an investigation. Identifiers are borne by a product or its packaging, and can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.

Note: everybody agreed that identifier is probably a too general term. We however felt that it would be appropriate to group "identifiying" terms under some kind of umbrella. We therefore propose to use _identifier for that purpose. As per OBI conventions, the _ prefixing identifier indicates that this is a helper class and shouldn't be considered as final.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item88'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000130<br></b><b><i>device model</i></b><i><br></i><font color="#000080">_identifier</font><br><i>definition</i>: A device model is an information content entity which is an identical sequence of characters borne by part of  each of a class of manufactured products or its packaging that is intended to be unique to a class of products. It can serve as a way to identify a specific product class within the set that the manufacture makes. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.<br><i>has curation status</i>: has curation status<br><i>editor note</i>: Note: this was originally called model number (Alan's proposal) then Instrument number (Chris' proposal). After discussing during the denrie call we believe device model would be more appropriate, and would cover instruments and others (e.g. synthetic biomaterial)<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item89'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000134<br></b><b><i>genome sequence version number</i></b><i><br></i><font color="#000080">_identifier</font><br><i>definition</i>: A genome sequence version number is an information content entity which indicates the specific version of a genome sequence typically resulting from an assembly of individual sequence reads into contigs. scaffolds, and chromosomes. Examples: mm9, hg18, Build 36.<br><i>has curation status</i>: has curation status<br><i>editor note</i>: Note1: this has been submitted to our tracker: cf
http://sourceforge.net/tracker/index.php?func=detail&aid=1844273&group_id=177891&atid=886178
Note2: this would be a child of version number above.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item90'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000131<br></b><b><i>serial number</i></b><i><br></i><font color="#000080">_identifier</font><br><i>definition</i>: A serial number is an information content entity which is a unique sequence of characters borne by part of manufactured product or its packaging that is assigned to each individual in some class of products, and so can serve as a way to identify an individual product within the class. Serial numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.<br><i>has curation status</i>: has curation status<br><i>editor note</i>: Note: during the call there was some confusion between serial number and model number. We agreed that it would be very helpful for all those terms to have example of usages - please add if you have any :-)<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item91'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000133<br></b><b><i>catalog number</i></b><i><br></i><font color="#000080">_identifier</font><br><i>definition</i>: A catalog number is an information content entity which is a sequence of characters identifying a product for a provider and/or manufacturer. Catalog numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.<br><i>has curation status</i>: has curation status<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item92'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000129<br></b><b><i>version number</i></b><i><br></i><font color="#000080">_identifier</font><br><i>definition</i>: A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name.<br><i>has curation status</i>: has curation status<br><i>editor note</i>: Note: we feel that at the moment we are happy with a general version number, and that we will subclass as needed in the future. For example, see 7. genome sequence version<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item93'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000132<br></b><b><i>lot number</i></b><i><br></i><font color="#000080">_identifier</font><br><i>alternative term</i>: batch number<br><i>definition</i>: A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example,  a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern  of other information objects, such as bar codes, numerals, or patterns of dots.<br><i>has curation status</i>: has curation status<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item94'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000141<br></b><b><i>digital quality</i></b><i><br></i><font color="#000080">generically_dependent_continuant</font><br><i>has curation status</i>: has curation status<br><i>editor note</i>: Need to rework digital entity. Digital quality was suggested by Barry.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item95'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000012<br></b><b><i>digital entity</i></b><i><br></i><font color="#000080">digital&middot;quality</font><br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000261<br><i>definition</i>: A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: digital entity<br><i>definition editor</i>: person:Chris Stoeckert<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item96'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000093<br></b><b><i>binary executable</i></b><i><br></i><font color="#000080">digital&middot;entity</font><br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000222<br><i>definition</i>: Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions.  (derived from Wikipedia, Nov 1, 2007)<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: binary executable<br><i>definition editor</i>: person:Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item97'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000105<br></b><b><i>digital document</i></b><i><br></i><font color="#000080">digital&middot;entity</font><br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000195<br><i>definition</i>: A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications.  The digital document does not refer to the information content of the document but to an instance of the file.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: digital document<br><i>definition editor</i>: person:Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item98'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000036<br></b><b><i>eSource document</i></b><i><br></i><font color="#000080">digital&middot;document</font><br><i>definition source</i>: article-without-pmid-or-doi:CDISCglossary<br><i>definition source</i>: OBI_0000158<br><i>definition</i>: an eSource document is a digital document consisting of a logical collection of Source data and other eSource documents that can be presented in an ordered way and capture the time of completion, change, and any signatures<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: eSource document<br><i>definition editor</i>: person:Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item99'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000107<br></b><b><i>electronic case report form</i></b><i><br></i><font color="#000080">digital&middot;document</font><br><i>definition source</i>: CDISC glossary<br><i>definition source</i>: OBI_0000167<br><i>definition</i>: An electronic case report form is a digital document used to record all of the protocol required information to be reported for each trial subject. An eCRF has the property that it can be audited and compliant with requirements of 21 CFR Part 11.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: electronic case report form<br><i>definition editor</i>: person:Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item100'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000023<br></b><b><i>eMedical record</i></b><i><br></i><font color="#000080">digital&middot;document</font><br><i>definition source</i>: article-without-pmid-or-doi:CDISCglossary<br><i>definition source</i>: OBI_0000078<br><i>definition</i>: An eMedical record is a digital document derived from a computer system used primarily for patient care in a clinical setting.  Not required to be compliant with requirements of 21 CFR Part 11.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: eMedical record<br><i>definition editor</i>: person:Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item101'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000047<br></b><b><i>text based digital entity</i></b><i><br></i><font color="#000080">digital&middot;document</font><br><i>example of usage</i>: XML file, C++ source code file<br><i>definition source</i>: group:OBI<br><i>definition source</i>: OBI_0000132<br><i>definition</i>: A text based digital entity is a digital entity that is encoded so that it only contains text characters.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: text based digital entity<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: digital_entity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item102'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000041<br></b><b><i>electronic case report tabulation</i></b><i><br></i><font color="#000080">digital&middot;document</font><br><i>definition source</i>: CDISC glossary<br><i>definition source</i>: OBI_0000083<br><i>definition</i>: An electronic case report tabulation is a digital document containing tabular data about multiple trial participants which is part of a clinical regulatory submission.  An eCRT has the property that it can be audited and compliant with requirements of 21 CFR Part 11  and has format suited to review by regulators.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: electronic case report tabulation<br><i>definition editor</i>: person:Jennifer Fostel<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item103'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000019<br></b><b><i>binary digital entity</i></b><i><br></i><font color="#000080">digital&middot;entity</font><br><i>example of usage</i>: MS Word document, ZIP file, DICOM file, JPEG file<br><i>definition source</i>: OBI_0000244<br><i>definition source</i>: group:OBI<br><i>definition</i>: A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: binary digital entity<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: digital_entity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item104'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000022<br></b><b><i>analytical cytology data file</i></b><i><br></i><font color="#000080">digital&middot;entity</font><br><i>example of usage</i>: FCS file, ACS file, foo.fcs, foo.asc<br><i>definition source</i>: OBI_0000210<br><i>definition source</i>: group:Flow Cytometry community<br><i>definition</i>: A digital entity intended to capture data in analytical cytology domain.<br><i>has curation status</i>: has curation status<br><i>preferred term</i>: analytical cytology data file<br><i>definition editor</i>: person:Chris Stoeckert<br><i>editor note</i>: binary_digital_entity<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item105'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#SpatialRegion<br></b><b><i>spatial_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Comment: All instances of continuant [snap:Continuant] are spatial entities, that is, they enter in the relation of (spatial) location with spatial region [snap:SpatialRegion] entities. As a particular case, the exact spatial location of a spatial region [snap:SpatialRegion] is this region itself.; Examples: the sum total of all space in the universe, parts of the sum total of all space in the universe; Comment: An instance of spatial region [snap:SpatialRegion] is a part of space. All parts of space are spatial region [snap:SpatialRegion] entities and only spatial region [snap:SpatialRegion] entities are parts of space. Space is the entire extent of the spatial universe, a designated individual, which is thus itself a spatial region [snap:SpatialRegion].; Definition: A continuant [snap:Continuant] that is neither bearer of quality [snap:Quality] entities nor inheres in any other entities.; Comment: Space and spatial region [snap:SpatialRegion] entities are entities in their own rights which exist independently of any entities which can be located at them. This view of space is sometimes called "absolutist" or "the container view". In BFO, the class site [snap:Site] allows for a so-called relational view of space, that is to say, a view according to which spatiality is a matter of relative location between entities and not a matter of being tied to space. The bridge between these two views is secured through the fact that while instances of site [snap:Site] are not spatial region [snap:SpatialRegion] entities, they are nevertheless spatial entities.</div></i><font color="#000080">(<i>and</i>&nbsp;continuant&nbsp;(<i>not</i>&nbsp;dependent_continuant)<br>&nbsp;(<i>or</i>&nbsp;one_dimensional_region&nbsp;three_dimensional_region&nbsp;two_dimensional_region<br>&nbsp;&nbsp;zero_dimensional_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item106'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#TwoDimensionalRegion<br></b><b><i>two_dimensional_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A spatial region [snap:SpatialRegion] with two dimensions.; Examples: the surface of a cube-shaped part of space, the surface of a sphere-shaped part of space, the surface of a rectilinear planar figure-shaped part of space</div></i><font color="#000080">spatial_region</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item107'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#OneDimensionalRegion<br></b><b><i>one_dimensional_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A spatial region [snap:SpatialRegion] with one dimension.; Examples: the part of space that is a line stretching from one end of absolute space to the other, an edge of a cube-shaped part of space</div></i><font color="#000080">(<i>and</i>&nbsp;spatial_region<br>&nbsp;(<i>disjoint-with</i>&nbsp;three_dimensional_region&nbsp;two_dimensional_region<br>&nbsp;&nbsp;zero_dimensional_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item108'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#ZeroDimensionalRegion<br></b><b><i>zero_dimensional_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A spatial region [snap:SpatialRegion] with no dimensions.; Examples: a point</div></i><font color="#000080">(<i>and</i>&nbsp;spatial_region<br>&nbsp;(<i>disjoint-with</i>&nbsp;two_dimensional_region&nbsp;one_dimensional_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item109'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#ThreeDimensionalRegion<br></b><b><i>three_dimensional_region</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A spatial region [snap:SpatialRegion] with three dimensions.; Examples: a cube-shaped part of space, a sphere-shaped part of space</div></i><font color="#000080">(<i>and</i>&nbsp;spatial_region<br>&nbsp;(<i>disjoint-with</i>&nbsp;two_dimensional_region&nbsp;zero_dimensional_region<br>&nbsp;&nbsp;one_dimensional_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item110'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#IndependentContinuant<br></b><b><i>independent_continuant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: A continuant [snap:Continuant] that is a bearer of quality [snap:Quality] and realizable entity [snap:RealizableEntity] entities, in which other entities inhere and which itself cannot inhere in anything.; Examples: an organism, a heart, a leg, a person, a symphony orchestra, a chair, the bottom right portion of a human torso, the lawn and atmosphere in front of our building; Synonyms: substantial entity</div></i><font color="#000080">(<i>and</i>&nbsp;continuant<br>&nbsp;(<i>or</i>&nbsp;fiat_object_part&nbsp;object&nbsp;object_aggregate&nbsp;object_boundary&nbsp;site)<br>&nbsp;(<i>disjoint-with</i>&nbsp;dependent_continuant&nbsp;spatial_region))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item111'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000018<br></b><b><i>material entity</i></b><i><br></i><font color="#000080">(!<equivalentClasses>&nbsp;!obi:IAO_0000018<br>&nbsp;(:or&nbsp;(!snap:FiatObjectPart&nbsp;!snap:Object&nbsp;!snap:ObjectAggregate)))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item112'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate<br></b><b><i>object_aggregate</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Examples: a heap of stones, a group of commuters on the subway, a collection of random bacteria, a flock of geese, the patients in a hospital; Definition: An independent continuant [snap:IndependentContinuant] that is a mereological sum of separate object [snap:Object] entities and possesses non-connected boundaries.; Synonyms: substance aggregate</div></i><font color="#000080">(<i>and</i>&nbsp;independent_continuant<br>&nbsp;(<i>disjoint-with</i>&nbsp;fiat_object_part&nbsp;site&nbsp;object_boundary))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item113'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#Object<br></b><b><i>object</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An independent continuant [snap:IndependentContinuant] that is spatially extended, maximally self-connected and self-contained (the parts of a substance are not separated from each other by spatial gaps) and possesses an internal unity. The identity of substantial object [snap:Object] entities is independent of that of other entities and can be maintained through time.; Synonyms: substance; Examples: an organism, a heart, a chair, a lung, an apple</div></i><font color="#000080">(<i>and</i>&nbsp;independent_continuant<br>&nbsp;(<i>disjoint-with</i>&nbsp;object_boundary&nbsp;fiat_object_part&nbsp;site&nbsp;object_aggregate))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item114'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#FiatObjectPart<br></b><b><i>fiat_object_part</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An independent continuant [snap:IndependentContinuant] that is part of an object [snap:Object] but is not demarcated by any physical discontinuities.; Examples: upper and lower lobes of the left lung, the dorsal and ventral surfaces of the body, the east side of Saarbruecken, the lower right portion of a human torso; Synonyms: fiat substance part</div></i><font color="#000080">(<i>and</i>&nbsp;independent_continuant<br>&nbsp;(<i>disjoint-with</i>&nbsp;object_boundary&nbsp;site&nbsp;object&nbsp;object_aggregate))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item115'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000178<br></b><b><i>material information bearer</i></b><i><br></i><font color="#000080">material&middot;entity</font><br><i>definition</i>: An information bearer is an artifact, such as a hard drive, upon which an information content entity generically depends.<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item116'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#Site<br></b><b><i>site</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An independent continuant [snap:IndependentContinuant] consisting of a characteristic spatial shape in relation to some arrangement of other continuant [snap:Continuant] entities and of the medium which is enclosed in whole or in part by this characteristic spatial shape. Site [snap:Site] entities are entities that can be occupied by other continuant [snap:Continuant] entities.; Comment: An instance of Site [snap:Site] is a mixture of independent continuant [snap:IndependentContinuant] entities which act as surrounding environments for other independent continuant [snap:IndependentContinuant] entities, most importantly for instances of object [snap:Object]. A site [snap:Site] is typically made of object [snap:Object] or fiat object part [snap:FiatObjectPart] entities and a surrounding medium in which is found an object [snap:Object] occupying the site [snap:Site]. Independent continuant [snap:IndependentContinuant] entities may be associated with others (which, then, are sites) through a relation of "occupation". That relation is connected to, but distinct from, the relation of spatial location. Site [snap:Site] entities are not to be confused with spatial region [snap:SpatialRegion] entities. In BFO, site [snap:Site] allows for a so-called relational view of space which is different from the view corresponding to the class spatial region [snap:SpatialRegion] (see the comment on this class).; Examples: a particular room in a particular hospital, Maria's nostril or her intestines for a variety of bacteria.</div></i><font color="#000080">(<i>and</i>&nbsp;independent_continuant<br>&nbsp;(<i>disjoint-with</i>&nbsp;object_boundary&nbsp;object&nbsp;object_aggregate))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item117'><html><div style="width:800"><b>Class: http://purl.obofoundry.org/obo/IAO_0000008<br></b><b><i>artifact</i></b><i><br></i><font color="#000080">independent_continuant</font><br><i>definition</i>: An artifact is an independent continuant that is the intended output of an objective driven process<br><i>has curation status</i>: has curation status<br><i>editor note</i>: There is not yet consensus this term<br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item118'><html><div style="width:800"><b>Class: http://www.ifomis.org/bfo/1.1/snap#ObjectBoundary<br></b><b><i>object_boundary</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Definition: An independent continuant [snap:IndependentContinuant] that is a lower dimensional part of a spatial entity, normally a closed two-dimensional surface. Boundaries are those privileged parts of object [snap:Object] entities that exist at exactly the point where the object [snap:Object] is separated off from the rest of the existing entities in the world.; Comment: Boundaries are theoretically difficult entities to account for, however the intuitive notion of a physical boundary as a surface of some sort (whether inside or outside of a thing) will generally serve as a good guide for the use of this universal.; Examples: the surface of the skin, the surface of the earth, the surface of the interior of the stomach, the outer surface of a cell or cell wall; Synonyms: substance boundary</div></i><font color="#000080">(<i>and</i>&nbsp;independent_continuant<br>&nbsp;(<i>disjoint-with</i>&nbsp;object&nbsp;object_aggregate&nbsp;fiat_object_part&nbsp;site))</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item119'><html><div style="width:800"><b>Class: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<a name='item120'><html><div style="width:800"><b>Class: http://www.geneontology.org/formats/oboInOwl#Synonym<br></b><i></i><font color="#000080">Thing</font><br><b>Subject of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by, Language, Resource&middot;Identifier, Rights&middot;Management, Creator, Contributor, Source, Publisher, Format<br><b>Object of</b>: Blank-7fdb, transformation_of, transformed_into, adjacent_to, generically&middot;denotes, has_part, integral_part_of, location_of, has_improper_part, is&middot;quality&middot;measurement&middot;of, contained_in, specifically&middot;denotes, precedes, proper_part_of, has_integral_part, derived_into, derives_from, describes, part_of, is&middot;about, located_in, relationship, materially&middot;denotes, propertyChain, has_participant, represents, contains, agent_in, has_proper_part, participates_in, has_agent, improper_part_of, preceded_by<br></div></html><hr>
<h3><i>Property Descriptions</i></h3><a name='item120'><html><div style="width:800"><b>Annotation-Property: http://purl.org/dc/elements/1.1/subject<br></b><b><i>Subject and Keywords</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">The topic of the content of the resource.</div></i></div></html><hr>
<a name='item121'><html><div style="width:800"><b>Annotation-Property: http://purl.org/dc/elements/1.1/description<br></b><b><i>Description</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">An account of the content of the resource.</div></i></div></html><hr>
<a name='item122'><html><div style="width:800"><b>Annotation-Property: http://purl.org/dc/elements/1.1/title<br></b><b><i>Title</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">A name given to the resource.</div></i></div></html><hr>
<a name='item123'><html><div style="width:800"><b>Annotation-Property: http://purl.org/dc/elements/1.1/type<br></b><b><i>Resource Type</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">The nature or genre of the content of the resource.</div></i></div></html><hr>
<a name='item124'><html><div style="width:800"><b>Annotation-Property: http://purl.org/dc/elements/1.1/relation<br></b><b><i>Relation</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">A reference to a related resource.</div></i></div></html><hr>
<a name='item125'><html><div style="width:800"><b>Annotation-Property: http://purl.org/dc/elements/1.1/coverage<br></b><b><i>Coverage</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">The extent or scope of the content of the resource.</div></i></div></html><hr>
<a name='item126'><html><div style="width:800"><b>Annotation-Property: http://purl.org/dc/elements/1.1/date<br></b><b><i>Date</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">A date associated with an event in the life cycle of the
         resource.</div></i></div></html><hr>
<a name='item127'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000112<br></b><b><i>example of usage</i></b><i><br></i></div></html><hr>
<a name='item128'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000119<br></b><b><i>definition source</i></b><i><br></i></div></html><hr>
<a name='item129'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000115<br></b><b><i>definition</i></b><i><br></i></div></html><hr>
<a name='item130'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000116<br></b><b><i>editor note</i></b><i><br></i></div></html><hr>
<a name='item131'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000114<br></b><b><i>has curation status</i></b><i><br></i></div></html><hr>
<a name='item132'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000117<br></b><b><i>definition editor</i></b><i><br></i></div></html><hr>
<a name='item133'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000111<br></b><b><i>preferred term</i></b><i><br></i></div></html><hr>
<a name='item134'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000118<br></b><b><i>alternative term</i></b><i><br></i></div></html><hr>
<a name='item135'><html><div style="width:800"><b>Annotation-Property: http://purl.obofoundry.org/obo/IAO_0000113<br></b><b><i>branch</i></b><i><br></i></div></html><hr>
<a name='item136'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasDate<br></b><i></i></div></html><hr>
<a name='item137'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasSubset<br></b><i></i></div></html><hr>
<a name='item138'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym<br></b><i></i></div></html><hr>
<a name='item139'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym<br></b><i></i></div></html><hr>
<a name='item140'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasVersion<br></b><i></i></div></html><hr>
<a name='item141'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasAlternativeId<br></b><i></i></div></html><hr>
<a name='item142'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasExactSynonym<br></b><i></i></div></html><hr>
<a name='item143'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#consider<br></b><i></i></div></html><hr>
<a name='item144'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasURI<br></b><i></i></div></html><hr>
<a name='item145'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasDefinition<br></b><i></i></div></html><hr>
<a name='item146'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasOBONamespace<br></b><i></i></div></html><hr>
<a name='item147'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#inSubset<br></b><i></i></div></html><hr>
<a name='item148'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasDefaultNamespace<br></b><i></i></div></html><hr>
<a name='item149'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasSynonymType<br></b><i></i></div></html><hr>
<a name='item150'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#savedBy<br></b><i></i></div></html><hr>
<a name='item151'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#replacedBy<br></b><i></i></div></html><hr>
<a name='item152'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasDbXref<br></b><i></i></div></html><hr>
<a name='item153'><html><div style="width:800"><b>Annotation-Property: http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym<br></b><i></i></div></html><hr>
<a name='item154'><html><div style="width:800"><b>Annotation-Property: http://www.w3.org/2002/07/owl#versionInfo<br></b><i></i></div></html><hr>
<a name='item155'><html><div style="width:800"><b>Annotation-Property: http://protege.stanford.edu/plugins/owl/protege#defaultLanguage<br></b><i></i></div></html><hr>
<a name='item156'><html><div style="width:800"><b>Annotation-Property: http://www.w3.org/2000/01/rdf-schema#comment<br></b><i></i></div></html><hr>
<a name='item157'><html><div style="width:800"><b>Annotation-Property: http://www.w3.org/2000/01/rdf-schema#seeAlso<br></b><i></i></div></html><hr>
<a name='item158'><html><div style="width:800"><b>Annotation-Property: http://www.w3.org/2000/01/rdf-schema#isDefinedBy<br></b><i></i></div></html><hr>
<a name='item159'><html><div style="width:800"><b>Annotation-Property: http://www.w3.org/2000/01/rdf-schema#label<br></b><i></i></div></html><hr>
<a name='item160'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/format<br></b><b><i>Format</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">The physical or digital manifestation of the resource.</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: Typically, Format may include the media-type or dimensions of
         the resource. Format may be used to determine the software,
         hardware or other equipment needed to display or operate the
         resource. Examples of dimensions include size and duration.
         Recommended best practice is to select a value from a
         controlled vocabulary (for example, the list of Internet Media
         Types [MIME] defining computer media formats).<br></div></html><hr>
<a name='item161'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/publisher<br></b><b><i>Publisher</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">An entity responsible for making the resource available</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: Examples of a Publisher include a person, an organisation,
         or a service.
         Typically, the name of a Publisher should be used to
         indicate the entity.<br></div></html><hr>
<a name='item162'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/source<br></b><b><i>Source</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">A reference to a resource from which the present resource
         is derived.</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: The present resource may be derived from the Source resource
         in whole or in part.  Recommended best practice is to reference
         the resource by means of a string or number conforming to a
         formal identification system.<br></div></html><hr>
<a name='item163'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/contributor<br></b><b><i>Contributor</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">An entity responsible for making contributions to the
         content of the resource.</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: Examples of a Contributor include a person, an 
         organisation, or a service.  Typically, the name of a 
         Contributor should be used to indicate the entity.<br></div></html><hr>
<a name='item164'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/creator<br></b><b><i>Creator</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">An entity primarily responsible for making the content 
         of the resource.</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: Examples of a Creator include a person, an organisation,
         or a service.  Typically, the name of a Creator should 
         be used to indicate the entity.<br></div></html><hr>
<a name='item165'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/rights<br></b><b><i>Rights Management</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Information about rights held in and over the resource.</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: 
          Typically, a Rights element will contain a rights 
          management statement for the resource, or reference 
          a service providing such information. Rights information 
          often encompasses Intellectual Property Rights (IPR), 
          Copyright, and various Property Rights. 
          If the Rights element is absent, no assumptions can be made 
          about the status of these and other rights with respect to 
          the resource.
    <br></div></html><hr>
<a name='item166'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/identifier<br></b><b><i>Resource Identifier</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">An unambiguous reference to the resource within a given context.</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: Recommended best practice is to identify the resource by means
         of a string or number conforming to a formal identification
         system.
         Example formal identification systems include the Uniform
         Resource Identifier (URI) (including the Uniform Resource
         Locator (URL)), the Digital Object Identifier (DOI) and the
         International Standard Book Number (ISBN).<br></div></html><hr>
<a name='item167'><html><div style="width:800"><b>Datatype-Property: http://purl.org/dc/elements/1.1/language<br></b><b><i>Language</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">A language of the intellectual content of the resource.</div></i><b>Domain</b>: Thing<br><b>Range</b>: Literal<br><i>Description</i>: Recommended best practice is to use RFC 3066 [RFC3066],
         which, in conjunction with ISO 639 [ISO639], defines two-
         and three-letter primary language tags with optional
         subtags.  Examples include "en" or "eng" for English,
         "akk" for Akkadian, and "en-GB" for English used in the
         United Kingdom.<br></div></html><hr>
<a name='item168'><html><div style="width:800"><b>Object-Property: http://www.w3.org/2006/12/owl2#propertyChain<br></b><i></i><b>Domain</b>: Thing<br><b>Range</b>: Thing<br></div></html><hr>
<a name='item169'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#relationship<br></b><b><i>relationship</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">A relationship between two classes (terms). Relationships between classes are expressed in terms of relations on underlying instances.</div></i><b>Subproperties</b>: has_part, preceded_by, participates_in, precedes, location_of, has_participant, adjacent_to, transformation_of, contained_in, derives_from, contains, derived_into, located_in, part_of<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7fab<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item170'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#preceded_by<br></b><b><i>preceded_by</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C.    The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.</div></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: precedes<br><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7f99<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item171'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#has_participant<br></b><b><i>has_participant</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.</div></i><b>Inverse of</b>: participates_in<br><b>Subproperty of</b>: relationship<br><b>Subproperties</b>: has_agent<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7f97<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item172'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#has_agent<br></b><b><i>has_agent</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">As for has_participant, but with the additional condition that the component instance is causally active in the relevant process</div></i><b>Inverse of</b>: agent_in<br><b>Subproperty of</b>: has_participant<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7f95<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item173'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#participates_in<br></b><b><i>participates_in</i></b><i><br></i><b>Inverse of</b>: has_participant<br><b>Subproperty of</b>: relationship<br><b>Subproperties</b>: agent_in<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item174'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#agent_in<br></b><b><i>agent_in</i></b><i><br></i><b>Inverse of</b>: has_agent<br><b>Subproperty of</b>: participates_in<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item175'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#contains<br></b><b><i>contains</i></b><i><br></i><b>Inverse of</b>: contained_in<br><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item176'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#located_in<br></b><b><i>located_in</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1.    Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus</div></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: location_of<br><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7fa4<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item177'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#part_of<br></b><b><i>part_of</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Parthood as a relation between instances: The primitive instance-level relation p part_of p1 is illustrated in assertions such as: this instance of rhodopsin mediated phototransduction part_of this instance of visual perception.    This relation satisfies at least the following standard axioms of mereology: reflexivity (for all p, p part_of p); anti-symmetry (for all p, p1, if p part_of p1 and p1 part_of p then p and p1 are identical); and transitivity (for all p, p1, p2, if p part_of p1 and p1 part_of p2, then p part_of p2). Analogous axioms hold also for parthood as a relation between spatial regions.    For parthood as a relation between continuants, these axioms need to be modified to take account of the incorporation of a temporal argument. Thus for example the axiom of transitivity for continuants will assert that if c part_of c1 at t and c1 part_of c2 at t, then also c part_of c2 at t.    Parthood as a relation between classes: To define part_of as a relation between classes we again need to distinguish the two cases of continuants and processes, even though the explicit reference to instants of time now falls away. For continuants, we have C part_of C1 if and only if any instance of C at any time is an instance-level part of some instance of C1 at that time, as for example in: cell nucleus part_ of cell.</div></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: has_part<br><b>Subproperty of</b>: relationship<br><b>Subproperties</b>: proper_part_of, integral_part_of, improper_part_of<br><b>Domain</b>: Thing<br><b>Range</b>: (<i>or</i><br>&nbsp;(has_part&nbsp;<i>all</i>&nbsp;(specifically&middot;denotes&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br>&nbsp;(is&middot;about&nbsp;<i>some</i>&nbsp;entity))<br><i>editor note</i>: There is controversy about this relation intended to represent the relation between some arbitrary physical thing that is used as a represention/proxy/pointer to something else<br><i>hasDefinition</i>: Blank-7faa<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item178'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#improper_part_of<br></b><b><i>improper_part_of</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">OBSOLETE. The definition is "As for part_of, with the additional constraint that subject and object may be identical". However, part_of is already reflexive, therefore improper_part_of is identical to part_of. If read differently, as "improper_part_of is part_of but not proper_part_of",improper_part_of becomes identity. So, improper_part_of is either identical to part_of or to identity, and not an intuitive synonym for either of them. [Robert Hoehndorf]</div></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: has_improper_part<br><b>Subproperty of</b>: ObsoleteProperty, part_of<br><b>Domain</b>: Thing<br><b>Range</b>: (<i>or</i><br>&nbsp;(has_part&nbsp;<i>all</i>&nbsp;(specifically&middot;denotes&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br>&nbsp;(is&middot;about&nbsp;<i>some</i>&nbsp;entity))<br><i>hasDefinition</i>: Blank-7f93<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item179'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#integral_part_of<br></b><b><i>integral_part_of</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">C integral_part_of C' if and only if: C part_of C' AND C' has_part C</div></i><b><font color="#000080">Transitive</font></b><br><b>Subproperty of</b>: part_of<br><b>Domain</b>: Thing<br><b>Range</b>: (<i>or</i><br>&nbsp;(has_part&nbsp;<i>all</i>&nbsp;(specifically&middot;denotes&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br>&nbsp;(is&middot;about&nbsp;<i>some</i>&nbsp;entity))<br><i>hasDefinition</i>: Blank-7fa8<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item180'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#derives_from<br></b><b><i>derives_from</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Derivation as a relation between instances. The temporal relation of derivation is more complex. Transformation, on the instance level, is just the relation of identity: each adult is identical to some child existing at some earlier time. Derivation on the instance-level is a relation holding between non-identicals. More precisely, it holds between distinct material continuants when one succeeds the other across a temporal divide in such a way that at least a biologically significant portion of the matter of the earlier continuant is inherited by the later. Thus we will have axioms to the effect that from c derives_from c1 we can infer that c and c1 are not identical and that there is some instant of time t such that c1 exists only prior to and c only subsequent to t. We will also be able to infer that the spatial region occupied by c as it begins to exist at t overlaps with the spatial region occupied by c1 as it ceases to exist in the same instant.</div></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: derived_into<br><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7f9c<br><i>hasOBONamespace</i>: relationship<br><i>hasExactSynonym</i>: Blank-7f9a<br></div></html><hr>
<a name='item181'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#derived_into<br></b><b><i>derived_into</i></b><i><br></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: derives_from<br><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item182'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#precedes<br></b><b><i>precedes</i></b><i><br></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: preceded_by<br><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item183'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#adjacent_to<br></b><b><i>adjacent_to</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Note that adjacent_to as thus defined is not a symmetric relation, in contrast to its instance-level counterpart. For it can be the case that Cs are in general such as to be adjacent to instances of C1 while no analogous statement holds for C1s in general in relation to instances of C. Examples are: nuclear membrane adjacent_to cytoplasm; seminal vesicle adjacent_to urinary bladder; ovary adjacent_to parietal pelvic peritoneum</div></i><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7fa0<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item184'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#transformation_of<br></b><b><i>transformation_of</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">When an embryonic oenocyte (a type of insect cell) is transformed into a larval oenocyte, one and the same continuant entity preserves its identity while instantiating distinct classes at distinct times. The class-level relation transformation_of obtains between continuant classes C and C1 wherever each instance of the class C is such as to have existed at some earlier time as an instance of the distinct class C1 (see Figure 2 in paper). This relation is illustrated first of all at the molecular level of granularity by the relation between mature RNA and the pre-RNA from which it is processed, or between (UV-induced) thymine-dimer and thymine dinucleotide. At coarser levels of granularity it is illustrated by the transformations involved in the creation of red blood cells, for example, from reticulocyte to erythrocyte, and by processes of development, for example, from larva to pupa, or from (post-gastrular) embryo to fetus or from child to adult. It is also manifest in pathological transformations, for example, of normal colon into carcinomatous colon. In each such case, one and the same continuant entity instantiates distinct classes at different times in virtue of phenotypic changes.</div></i><b><font color="#000080">Transitive</font></b><br><b>Subproperty of</b>: relationship<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasDefinition</i>: Blank-7f9e<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item185'><html><div style="width:800"><b>Object-Property: http://purl.obofoundry.org/obo/IAO_0000136<br></b><b><i>is about</i></b><i><br></i><b>Subproperties</b>: generically&middot;denotes, represents, materially&middot;denotes, is&middot;quality&middot;measurement&middot;of, specifically&middot;denotes, describes, Blank-7fdb<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br><i>example of usage</i>: This document is about information artifacts and their representations<br><i>definition source</i>: Smith, Ceusters, Ruttenberg, 2000 years of philosophy<br><i>definition</i>: a representation is_about anything exactly when some part of the information_artifact denotes the entity<br><i>has curation status</i>: pending&middot;final&middot;vetting<br><i>definition editor</i>: person:Alan Ruttenberg<br></div></html><hr>
<a name='item186'><html><div style="width:800"><b>Object-Property: http://purl.obofoundry.org/obo/IAO_0000223<br></b><b><i>represents</i></b><i><br></i><b>Subproperty of</b>: is&middot;about<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br></div></html><hr>
<a name='item187'><html><div style="width:800"><b>Object-Property: http://purl.obofoundry.org/obo/IAO_0000220<br></b><b><i>materially denotes</i></b><i><br></i><b>Subproperty of</b>: is&middot;about<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br></div></html><hr>
<a name='item188'><html><div style="width:800"><b>Object-Property: http://purl.obofoundry.org/obo/IAO_0000222<br></b><b><i>describes</i></b><i><br></i><b>Subproperty of</b>: is&middot;about<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br></div></html><hr>
<a name='item189'><html><div style="width:800"><b>Object-Property: http://purl.obofoundry.org/obo/IAO_0000135<br></b><b><i>specifically denotes</i></b><i><br></i><b>Subproperty of</b>: is&middot;about<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br><i>example of usage</i>: The process of creation is, for example,  writing down on paper the name of a friend by deliberately creating a certain pattern using ink.

Here the ink + paper is the independent continuant and the carrier is the pattern in the ink.

c = pattern in the ink
b = paper + ink
r = friend<br><i>definition source</i>: Smith, Ceusters, Ruttenberg, 2000 years of philosophy<br><i>definition</i>: c specifically denotes r =def 
r is a portion of reality
& c is a particular quality
& c depends specifically on some independent continuant b 
& b acquired c as the result of the achievement of an objective to enable pointing to r repeatedly. 

Marked means there is a changed or additional quality of the bearer - the  quality is the information carrier.

Case 1
Memory trace as mark created when reading some description of some friend. The trace can denote.

Case 2
Pattern of ink arrayed on paper as mark when writing down a friend's name

Case 3
Pattern of magnetic domains on scattered pieces of a hard disk platter as mark when saving a file.<br><i>has curation status</i>: pending&middot;final&middot;vetting<br><i>definition editor</i>: Alan Ruttenberg<br></div></html><hr>
<a name='item190'><html><div style="width:800"><b>Object-Property: http://purl.obofoundry.org/obo/IAO_0000221<br></b><b><i>is quality measurement of</i></b><i><br></i><b>Subproperty of</b>: is&middot;about<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br><i>definition</i>: m is a quality measurement of q at t when
q is a determinable quality 
there is a measurement process p that has_output m
m has a value part that together with the units of the value of q at t.

p is a assay 

assay:
process and has_input some material entity
and has_output some information content entity 
and which is such that instances of this process type reliably generate outputs that describes the input.

a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality. 

unit of measure is a quality, e.g. the length of a ruler.

a represents b means either a denotes b or a describes

describe:
a describes b means a is about b and a allows an inference of at least one quality of b

Example:

q = height of barry
p is the process using a tape measure extend across the longer part of barry and reading off the number at the far end.
v is that number
# dimension is height
unit of measure is inches

We have had a long discussion about denotes versus describes.<br><i>editor note</i>: This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail.

Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.<br></div></html><hr>
<a name='item191'><html><div style="width:800"><b>Object-Property: http://purl.obofoundry.org/obo/IAO_0000219<br></b><b><i>generically denotes</i></b><i><br></i><b>Subproperty of</b>: is&middot;about<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br><i>example of usage</i>: The word Boston on a traffic signn in Massachusetts generically denotes the city of Boston<br><i>definition source</i>: Smith, Ceusters, Ruttenberg, 2000 years of philosophy<br><i>definition</i>: g generically denotes r =def 
r is a portion of reality
there is some c that is a concretization of g 
every c that is a concretization of g specifically denotes r<br><i>definition editor</i>: person:Alan Ruttenberg<br></div></html><hr>
<a name='item192'><html><div style="width:800"><b>Object-Property: bNode2a5a0f8a:11d25fa5cd1:-7fdb<br></b><i></i><b>Subproperty of</b>: is&middot;about<br><b>Domain</b>: (<i>or</i>&nbsp;(has_part&nbsp;<i>some</i>&nbsp;(specifically&middot;denotes&nbsp;<i>some</i>&nbsp;entity))<br>&nbsp;(is&middot;about&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br><b>Range</b>: Thing<br></div></html><hr>
<a name='item193'><html><div style="width:800"><b>Object-Property: http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty<br></b><i></i><b>Subproperties</b>: improper_part_of, has_improper_part, transformed_into<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br></div></html><hr>
<a name='item194'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#improper_part_of<br></b><b><i>improper_part_of</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">OBSOLETE. The definition is "As for part_of, with the additional constraint that subject and object may be identical". However, part_of is already reflexive, therefore improper_part_of is identical to part_of. If read differently, as "improper_part_of is part_of but not proper_part_of",improper_part_of becomes identity. So, improper_part_of is either identical to part_of or to identity, and not an intuitive synonym for either of them. [Robert Hoehndorf]</div></i><b><font color="#000080">Transitive</font></b><br><b>Inverse of</b>: has_improper_part<br><b>Subproperty of</b>: ObsoleteProperty, part_of<br><b>Domain</b>: Thing<br><b>Range</b>: (<i>or</i><br>&nbsp;(has_part&nbsp;<i>all</i>&nbsp;(specifically&middot;denotes&nbsp;<i>all</i>&nbsp;(<i>not</i>&nbsp;entity)))<br>&nbsp;(is&middot;about&nbsp;<i>some</i>&nbsp;entity))<br><i>hasDefinition</i>: Blank-7f93<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
<a name='item195'><html><div style="width:800"><b>Object-Property: http://www.obofoundry.org/ro/ro.owl#transformed_into<br></b><b><i>transformed_into</i></b><i><div style="margin-left:5px;margin-top:2px;margin-bottom:2px">Obsoleted</div></i><b>Subproperty of</b>: ObsoleteProperty<br><b>Domain</b>: Thing<br><b>Range</b>: Thing<br><i>hasOBONamespace</i>: relationship<br></div></html><hr>
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